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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26825509_26825802_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26825509 - 26825802
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTACACGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAA
U12 Branch Point Sequence:
CTTCTCTTACAC
Flanking Amino Acid:
EMRAKADKLKRAAERDARKA
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
69.4
0.48
1.2
63.4
44.3
Major PPT
71.3
0.48
0.9
66.1
33.7
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
52.4
0.05
1.8
64.41
41.1

Associated Gene:

Gene:
TTC4
Ensembl Gene ID:
ENSAPLG00000003928
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017337
26821658 - 26827957
6300
ENSAPLT00000004035
26821658 - 26829389
7732
ENSAPLT00000044681
26821658 - 26829389
7732
ENSAPLT00000040271
26821658 - 26828542
6885
ENSAPLT00000020392
26821658 - 26828542
6885