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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26826811_26827316_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26826811 - 26827316
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGGGT
5'SS Class:
major
3'SS Sequence:
ATTTTGTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTGTTTATAG
Flanking Amino Acid:
TNRGAAHFHLGNYRSALNDA
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.9
42.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.3
0.73
0.8
77
36.7
Minor 5ss
25.1
-2.9
3.4
29
43.5
Minor BPS
49.2
-0.1
2.1
64.12
44

Associated Gene:

Gene:
TTC4
Ensembl Gene ID:
ENSAPLG00000003928
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020392
26821658 - 26828542
6885
ENSAPLT00000017337
26821658 - 26827957
6300
ENSAPLT00000004035
26821658 - 26829389
7732
ENSAPLT00000044681
26821658 - 26829389
7732
ENSAPLT00000040271
26821658 - 26828542
6885