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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26844401_26845368_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26844401 - 26845368
Intron Length:
968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
TCCTCTTTAAAG
Flanking Amino Acid:
HTRSIFWELQDIIPFGNNPV
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
74.4
36
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
76.9
0.61
1
77.9
28.3
Minor 5ss
32.2
-2
3
40.3
45.3
Minor BPS
65.3
0.34
1.5
63.96
44.2

Associated Gene:

Gene:
DHCR24
Ensembl Gene ID:
ENSAPLG00000004359
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004490
26840831 - 26852246
11416