About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26845513_26846312_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26845513 - 26846312
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
GATTTGCTAATG
Flanking Amino Acid:
VLTDEAEQSKINRIGNYYKP
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1.1
83.2
30.8
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
82.8
0.74
0.7
78
30.8
Minor 5ss
40.6
-1.1
2.6
50.9
45.5
Minor BPS
44.8
-0.5
2.3
53.52
41.6

Associated Gene:

Gene:
DHCR24
Ensembl Gene ID:
ENSAPLG00000004359
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004490
26840831 - 26852246
11416