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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26846577_26846666_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26846577 - 26846666
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGACAA
5'SS Class:
major
3'SS Sequence:
ATACTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TATGACATACTT
Flanking Amino Acid:
ADGSLVRCTPTENSDLFYAV
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
61.9
38.6
Major BPS
75.8
0.64
1
65.8
41
Major PPT
82.5
0.73
0.9
77.2
36.1
Minor 5ss
33.5
-1.9
3.2
45
43.6
Minor BPS
45.4
-0.2
2.1
66.97
43.7

Associated Gene:

Gene:
DHCR24
Ensembl Gene ID:
ENSAPLG00000004359
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004490
26840831 - 26852246
11416