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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26847156_26847596_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26847156 - 26847596
Intron Length:
441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTTC
5'SS Class:
major
3'SS Sequence:
TTTGGCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
TTTTTTTTGGCT
Flanking Amino Acid:
DVLEVDSERQVVRVEPLVTM
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
73.9
38
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
80.1
0.68
0.8
77.7
36.7
Minor 5ss
46.8
-0.3
3.2
67.4
44
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
DHCR24
Ensembl Gene ID:
ENSAPLG00000004359
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004490
26840831 - 26852246
11416