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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26871112_26871201_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26871112 - 26871201
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CGCGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CCCTCCTGATGC
Flanking Amino Acid:
GHAAFHRATKASWRLPGRYV
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
65.2
0.34
0.9
57.7
33.3
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
44.7
-0.4
2
50.27
46.5

Associated Gene:

Gene:
PCSK9
Ensembl Gene ID:
ENSAPLG00000004691
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004871
26870950 - 26874241
3292