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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26872222_26872301_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26872222 - 26872301
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCCAT
U12 Branch Point Sequence:
TGTCCTGCCATC
Flanking Amino Acid:
GKGTVSGTLIGLEFIKTTLE
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
54.5
0.11
1.4
66.4
42.2
Major PPT
76.5
0.6
0.8
68.5
37.4
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
39.1
-0.8
2.3
52.32
39.5

Associated Gene:

Gene:
PCSK9
Ensembl Gene ID:
ENSAPLG00000004691
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004871
26870950 - 26874241
3292