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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26872499_26872587_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26872499 - 26872587
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCCAATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCAAT
U12 Branch Point Sequence:
CACCCCCCAATC
Flanking Amino Acid:
CLYSPASEPEVITVGATNRE
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
73.2
34.8
Major BPS
48.8
-0
1.3
56.3
37.4
Major PPT
64.5
0.33
0.9
56.5
32.1
Minor 5ss
30.5
-2.2
3.8
47.1
48.5
Minor BPS
44.7
-0.4
1.8
50.07
40.4

Associated Gene:

Gene:
PCSK9
Ensembl Gene ID:
ENSAPLG00000004691
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004871
26870950 - 26874241
3292