About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26873452_26873532_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26873452 - 26873532
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTGGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAT
U12 Branch Point Sequence:
CCCCCGGTGATG
Flanking Amino Acid:
SGRRLGEHMEDKEGRKQCVA
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.7
41.7
Major BPS
53.7
0.09
1.4
46.5
47
Major PPT
67
0.38
0.9
60.5
35.3
Minor 5ss
24.7
-2.9
3
29.8
43.1
Minor BPS
35.8
-1.2
2.4
34.62
41.1

Associated Gene:

Gene:
PCSK9
Ensembl Gene ID:
ENSAPLG00000004691
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004871
26870950 - 26874241
3292