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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26873699_26873792_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26873699 - 26873792
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGCCC
5'SS Class:
major
3'SS Sequence:
CTGCCATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTGCCATTAACA
Flanking Amino Acid:
GCSPQDHVLTGCSFHSPSAT
Intron Amino Acid Position:
540

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.6
39.2
Major BPS
79
0.72
1
69
38.9
Major PPT
67.6
0.4
1
62
37.7
Minor 5ss
32.2
-2
3.3
40.2
39.7
Minor BPS
62.8
0.4
1.7
70.13
41.8

Associated Gene:

Gene:
PCSK9
Ensembl Gene ID:
ENSAPLG00000004691
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004871
26870950 - 26874241
3292