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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26880824_26881423_R

Intron Information:

Intron Rank:
63
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26880824 - 26881423
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCATGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TGTCCAGTAATA
Flanking Amino Acid:
CVKFLVTLAQKCPTAKDYFK
Intron Amino Acid Position:
2496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
79
0.72
1
78.4
31.2
Major PPT
68.9
0.43
0.9
61.2
39.8
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
48.6
-0.1
2.2
67
39.2

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042680
26879493 - 26937053
57561
ENSAPLT00000005871
26879493 - 26937053
57561