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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26881503_26883100_R

Intron Information:

Intron Rank:
62
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26881503 - 26883100
Intron Length:
1598

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
FAFETENGLIALMHHSNHVD
Intron Amino Acid Position:
2470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.7
81.8
38.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.6
0.8
0.8
79.9
32.1
Minor 5ss
24.8
-2.9
3.6
32.5
42.4
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042680
26879493 - 26937053
57561
ENSAPLT00000005871
26879493 - 26937053
57561