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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26883521_26883750_R

Intron Information:

Intron Rank:
60
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26883521 - 26883750
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGATG
5'SS Class:
major
3'SS Sequence:
TTCTTATTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TATTTCTTATTT
Flanking Amino Acid:
FSFTVLHFIKTQLETAPPHE
Intron Amino Acid Position:
2426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
66.7
44.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.3
0.88
0.7
84.8
28.8
Minor 5ss
33.8
-1.8
3.6
47.3
48.3
Minor BPS
70.7
0.73
1.5
84.59
36.2

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042680
26879493 - 26937053
57561
ENSAPLT00000005871
26879493 - 26937053
57561