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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26888114_26888842_R

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26888114 - 26888842
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCGCCTTTTATC
Flanking Amino Acid:
FVGPEGRELVKTFLLECSVR
Intron Amino Acid Position:
2210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
89.4
0.89
0.7
81.5
35.9
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
51.7
0.03
1.6
59.2
40.6

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042680
26879493 - 26937053
57561
ENSAPLT00000005871
26879493 - 26937053
57561