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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26891279_26891627_R

Intron Information:

Intron Rank:
50
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26891279 - 26891627
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTATATATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTATATATTT
Flanking Amino Acid:
VVRQEAEDLSLSAPSSPEIS
Intron Amino Acid Position:
2055

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
77
32.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.1
0.61
0.9
75.1
39.1
Minor 5ss
47.3
-0.3
2.8
67.6
37.4
Minor BPS
49.8
0.07
2
77.67
39

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042680
26879493 - 26937053
57561
ENSAPLT00000005871
26879493 - 26937053
57561