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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26892523_26892921_R

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26892523 - 26892921
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTCC
5'SS Class:
major
3'SS Sequence:
TTTTTGGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTCTAT
U12 Branch Point Sequence:
TTTTGTTCTATT
Flanking Amino Acid:
GHYYSFIKDRRGCGKGKWYK
Intron Amino Acid Position:
1966

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.4
36
Major BPS
56.1
0.15
1.5
58.5
47.9
Major PPT
85.6
0.8
0.9
79.9
37.7
Minor 5ss
38.1
-1.3
3.2
51.4
45.3
Minor BPS
48
-0
2.2
75.66
41.6

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042680
26879493 - 26937053
57561
ENSAPLT00000005871
26879493 - 26937053
57561