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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26893143_26893533_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26893143 - 26893533
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTAATCTAAAAT
Flanking Amino Acid:
RSIKYDEQIRFPWMLNMEPY
Intron Amino Acid Position:
1893

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
74.9
37
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
81.7
0.71
0.8
76.1
32.1
Minor 5ss
31.1
-2.2
3.1
31.2
42.7
Minor BPS
55
0.23
1.8
74.62
41.7

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042680
26879493 - 26937053
57561
ENSAPLT00000005871
26879493 - 26937053
57561