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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26894199_26894421_R

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26894199 - 26894421
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTTA
5'SS Class:
major
3'SS Sequence:
TTCTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
DQKICKDCPHRYEREEAFMA
Intron Amino Acid Position:
1805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1.1
75.7
36.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86
0.81
0.7
85.7
27.3
Minor 5ss
45.9
-0.4
3.2
64.4
47
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042680
26879493 - 26937053
57561
ENSAPLT00000005871
26879493 - 26937053
57561