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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26895146_26895442_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26895146 - 26895442
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
AGTTAGTAAAGC
Flanking Amino Acid:
QLYMQPGLPEALLSIDDDTD
Intron Amino Acid Position:
1703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
78.1
36.6
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
81.7
0.71
0.8
73.6
36.9
Minor 5ss
34.5
-1.8
3.3
50.2
46
Minor BPS
40.4
-0.7
2.5
54.2
43.5

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042680
26879493 - 26937053
57561
ENSAPLT00000005871
26879493 - 26937053
57561