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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26898279_26898951_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26898279 - 26898951
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TTGTATCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TCTTCCCAAAAA
Flanking Amino Acid:
PTSIMRGINQRLLSQCTEYF
Intron Amino Acid Position:
1490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
80
0.67
0.8
78.1
36.1
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
50.8
0.02
2.1
69.28
42.8

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042680
26879493 - 26937053
57561
ENSAPLT00000005871
26879493 - 26937053
57561