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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26901091_26901428_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26901091 - 26901428
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAAG
5'SS Class:
major
3'SS Sequence:
CTTATTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
IIPAARVAIQTMEVNDFTST
Intron Amino Acid Position:
1308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
72.4
38.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
86.8
0.83
0.7
84.8
29.9
Minor 5ss
33.3
-1.9
3.2
39.9
40.1
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042680
26879493 - 26937053
57561
ENSAPLT00000005871
26879493 - 26937053
57561