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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26908188_26908381_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26908188 - 26908381
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TCTATTTAAACA
Flanking Amino Acid:
FIADCYTRLEAASSALGGPT
Intron Amino Acid Position:
867

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78.5
0.64
0.9
70.6
39.6
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
56
0.18
1.7
66.81
40.3

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005871
26879493 - 26937053
57561
ENSAPLT00000042680
26879493 - 26937053
57561