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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26912238_26914052_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26912238 - 26914052
Intron Length:
1815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTGGTTTA
5'SS Class:
major
3'SS Sequence:
TTCTCACTACTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTACCT
Flanking Amino Acid:
IIKCIEDIKRSSQHNNPQFV
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.39
1.3
67.1
41
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
70.4
0.46
0.9
64
37
Minor 5ss
38.3
-1.3
3
41.8
44.9
Minor BPS
67.9
0.64
1.6
82.56
39.6

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005871
26879493 - 26937053
57561