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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26915010_26915542_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26915010 - 26915542
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTAAAA
U12 Branch Point Sequence:
TAAAACCTACCT
Flanking Amino Acid:
DELTKIWRIQSGQSSTVIEN
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
87
30
Major BPS
64.3
0.36
1
71.3
30.3
Major PPT
91.3
0.93
0.6
84.4
30.6
Minor 5ss
41
-1
2.9
56.9
47.4
Minor BPS
45
-0.3
2.1
65.21
44.1

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005871
26879493 - 26937053
57561
ENSAPLT00000042680
26879493 - 26937053
57561