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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26922556_26923096_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26922556 - 26923096
Intron Length:
541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTTGTC
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTCTTTCAAG
Flanking Amino Acid:
PVGLLGVLTMAFNPDNEYHF
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1
66.9
36.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
83.9
0.76
0.9
83.4
32
Minor 5ss
43.5
-0.7
3.1
57.9
42
Minor BPS
61
0.2
1.9
72.3
40.7

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042680
26879493 - 26937053
57561
ENSAPLT00000005871
26879493 - 26937053
57561