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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26925444_26936711_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26925444 - 26936711
Intron Length:
11268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCACTTGAATT
Flanking Amino Acid:
PAYHEVVDAEKNDENGNCSA
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.8
0.87
0.7
84.3
29.4
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
63.3
0.49
1.5
77.29
39.6

Associated Gene:

Gene:
USP24
Ensembl Gene ID:
ENSAPLG00000005515
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042680
26879493 - 26937053
57561
ENSAPLT00000005871
26879493 - 26937053
57561