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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26941995_26971560_F

Intron Information:

Intron Rank:
136096
Intron Class:
major
Intron Phase:
Intron Coordinates:
26941995 - 26971560
Intron Length:
29566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCACAG
5'SS Class:
major
3'SS Sequence:
TTTATTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGCCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.2
53.6
45.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.9
0.83
0.7
81.8
30.1
Minor 5ss
35.8
-1.6
3.3
47.5
47.9
Minor BPS
61
0.43
1.6
76.99
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023327
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047979
26941660 - 27003310
61651