Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26971749_27003138_F

Intron Information:

Intron Rank:

136097

Intron Class:

major

Intron Phase:

Intron Coordinates:

26971749 - 27003138

Intron Length:

31390

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCCAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTTGGGTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTATAAC

U12 Branch Point Sequence:

GTTTCTTTGTTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.2

0.71

66.8

40.4

Major BPS

65.6

0.39

1.1

67.7

34.6

Major PPT

70.6

0.46

69.2

41.8

Minor 5ss

43.3

-0.7

2.9

55.6

48.6

Minor BPS

47.1

-0.1

3.4

79.17

37.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023327

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047979

26941660 - 27003310

61651