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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27314969_27318863_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27314969 - 27318863
Intron Length:
3895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTAAG
U12 Branch Point Sequence:
TGGGGCTAAGTT
Flanking Amino Acid:
AQGALVAYCVVFYVSDLFKP
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
45.1
-0.3
1.7
49.3
44.7
Major PPT
77.8
0.63
0.8
69.6
36.8
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
40.7
-0.6
2.2
55.77
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007323
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007612
27313843 - 27354941
41099