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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27319041_27325203_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27319041 - 27325203
Intron Length:
6163

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
FSLYTMLYLVFYLQARFTWK
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
78.3
0.64
0.7
73.1
25.2
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007323
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007612
27313843 - 27354941
41099