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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27326313_27331410_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27326313 - 27331410
Intron Length:
5098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTGATCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TGTTGCTTGATC
Flanking Amino Acid:
AAGILIAILAIITGELYRIH
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
72.2
37.5
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
72.5
0.51
0.9
65.7
36
Minor 5ss
39.9
-1.1
2.8
57.3
39.7
Minor BPS
64.1
0.43
1.8
74.28
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007323
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007612
27313843 - 27354941
41099