About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27331569_27354802_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27331569 - 27354802
Intron Length:
23234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
CCCTTCTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
GGTTGGTTATCG
Flanking Amino Acid:
ICLDFLCLVMAGLPFLIIET
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
62.3
43.9
Major BPS
71.2
0.53
1
61
37.5
Major PPT
79.7
0.67
0.7
72.3
32.4
Minor 5ss
33.8
-1.8
2.8
32.9
41.7
Minor BPS
42.5
-0.7
2.6
52.63
47.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007323
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007612
27313843 - 27354941
41099