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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27384264_27386324_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27384264 - 27386324
Intron Length:
2061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TATTTCTTACTA
Flanking Amino Acid:
KLFRHPHIIKLYQVISTPTD
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
80.9
0.7
1
82.9
32.5
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
67.7
0.55
1.5
75.8
35.8

Associated Gene:

Gene:
PRKAA2
Ensembl Gene ID:
ENSAPLG00000007464
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007764
27377887 - 27398074
20188