About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27387895_27388706_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27387895 - 27388706
Intron Length:
812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTGAC
5'SS Class:
major
3'SS Sequence:
ATCTTGTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ATGTCAATATGT
Flanking Amino Acid:
AHMNAKIADFGLSNMMSDGE
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
70.2
33.9
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
79.3
0.66
0.8
77.3
36.4
Minor 5ss
39.2
-1.2
3.1
48.3
42.5
Minor BPS
42.9
-0.4
2.2
64.54
45.4

Associated Gene:

Gene:
PRKAA2
Ensembl Gene ID:
ENSAPLG00000007464
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007764
27377887 - 27398074
20188