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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27393491_27395565_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27393491 - 27395565
Intron Length:
2075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCATGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TATTCCTTAAAG
Flanking Amino Acid:
AMKQLDFEWKVVNSYHLRVR
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
75.4
0.57
1
69.1
41.5
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
78.6
0.76
1.4
78.43
37.6

Associated Gene:

Gene:
PRKAA2
Ensembl Gene ID:
ENSAPLG00000007464
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007764
27377887 - 27398074
20188