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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27396264_27396970_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
27396264 - 27396970
Intron Length:
707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATTGCAC
5'SS Class:
major
3'SS Sequence:
ACCTTTCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TACCTCTCACCT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.7
0.25
1.1
49.8
40.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
70.8
0.47
0.8
66
29.4
Minor 5ss
37.7
-1.4
3.3
50.7
46
Minor BPS
48.5
-0
1.8
66.43
44

Associated Gene:

Gene:
PRKAA2
Ensembl Gene ID:
ENSAPLG00000007464
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007764
27377887 - 27398074
20188