About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27403970_27404117_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27403970 - 27404117
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATTTGCTTATTT
Flanking Amino Acid:
AVICRNSEGRYGYVLVEHLN
Intron Amino Acid Position:
689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
80.3
0.68
0.7
78.8
26.7
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
61.2
0.43
2
82.08
39.9

Associated Gene:

Gene:
FYB2
Ensembl Gene ID:
ENSAPLG00000007871
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008176
27403503 - 27425260
21758