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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27404275_27404570_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27404275 - 27404570
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTGAG
5'SS Class:
major
3'SS Sequence:
TTCCTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TGTGCTTTCATT
Flanking Amino Acid:
EEKIFRETFLYDKEISVINT
Intron Amino Acid Position:
637

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.2
40.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
85.7
0.8
0.7
80.9
24.3
Minor 5ss
31.1
-2.2
3.3
36.5
43.1
Minor BPS
57.1
0.3
1.8
75.88
41.7

Associated Gene:

Gene:
FYB2
Ensembl Gene ID:
ENSAPLG00000007871
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008176
27403503 - 27425260
21758