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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27404656_27406235_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27404656 - 27406235
Intron Length:
1580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTTTACT
5'SS Class:
major
3'SS Sequence:
TCTCTTGGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATGTAT
U12 Branch Point Sequence:
ATGCTCAGAATG
Flanking Amino Acid:
DRRKSSDDVDRSILKIRKNS
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
69.9
40.2
Major BPS
54.9
0.12
1.4
55.4
41.7
Major PPT
76.6
0.6
1
72.2
37.8
Minor 5ss
39.9
-1.1
2.5
53.3
43.2
Minor BPS
45
-0.5
1.7
48.87
38.7

Associated Gene:

Gene:
FYB2
Ensembl Gene ID:
ENSAPLG00000007871
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008176
27403503 - 27425260
21758