About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27408665_27410632_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27408665 - 27410632
Intron Length:
1968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
CTGTTTTGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GACTCTCTAATT
Flanking Amino Acid:
EIGGDNPAKEESERQKRFGN
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
66.9
40
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
70.3
0.46
1.1
68.6
42
Minor 5ss
41.8
-0.9
2.8
49.2
41.2
Minor BPS
57.2
0.3
1.7
70.43
40.8

Associated Gene:

Gene:
FYB2
Ensembl Gene ID:
ENSAPLG00000007871
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008176
27403503 - 27425260
21758