About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27411048_27411152_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27411048 - 27411152
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TCTTGTCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
AAACCCCCAAGT
Flanking Amino Acid:
YDDVEGLQDRLSHASDVSSP
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
81.2
0.7
0.8
73.5
37.1
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
43.6
-0.4
2
59.81
42.5

Associated Gene:

Gene:
FYB2
Ensembl Gene ID:
ENSAPLG00000007871
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008176
27403503 - 27425260
21758