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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27411271_27412999_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27411271 - 27412999
Intron Length:
1729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTCTTGTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
AGCTCCCAAAGC
Flanking Amino Acid:
QGLAKDRAEPPPYVYVGAPG
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.3
72.6
38.9
Major BPS
54
0.1
1
59.7
32.6
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
36.7
-1.5
2.9
50.4
39.3
Minor BPS
43.9
-0.4
2.2
53.95
43.7

Associated Gene:

Gene:
FYB2
Ensembl Gene ID:
ENSAPLG00000007871
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008176
27403503 - 27425260
21758