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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27413577_27414491_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27413577 - 27414491
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTGAAATTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ATCCCTTTAATT
Flanking Amino Acid:
KQKTLPFGKSSPWRDTIEDE
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
77.7
31.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
71
0.47
1
66.1
44
Minor 5ss
41.5
-0.9
2.7
54.2
42.9
Minor BPS
71.7
0.76
1.2
79.48
36.9

Associated Gene:

Gene:
FYB2
Ensembl Gene ID:
ENSAPLG00000007871
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008176
27403503 - 27425260
21758