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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27416655_27418918_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27416655 - 27418918
Intron Length:
2264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CTCATCCTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTCATCC
Flanking Amino Acid:
AEDEDYLIPESTQLEEQHNC
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.8
38.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
75.8
0.58
0.8
72.8
31.9
Minor 5ss
37.5
-1.4
3
47.8
47.9
Minor BPS
55.7
0.16
1.8
71.92
39.1

Associated Gene:

Gene:
FYB2
Ensembl Gene ID:
ENSAPLG00000007871
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008176
27403503 - 27425260
21758