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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27420183_27421165_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
27420183 - 27421165
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGTAA
5'SS Class:
major
3'SS Sequence:
TTCCCTGGAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTAAT
U12 Branch Point Sequence:
GTTCCCTGGAGC
Flanking Amino Acid:
TITLQPERHKEPEHPLCHLG
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
66.9
34.4
Major BPS
51.5
0.04
1.5
55.4
48.1
Major PPT
65.1
0.34
1
61.8
38.7
Minor 5ss
41.5
-0.9
3.2
54.8
49.4
Minor BPS
50.8
0.01
1.8
65.24
40.2

Associated Gene:

Gene:
FYB2
Ensembl Gene ID:
ENSAPLG00000007871
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008176
27403503 - 27425260
21758