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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27430486_27432530_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27430486 - 27432530
Intron Length:
2045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAA
U12 Branch Point Sequence:
ACACCTTCAAAG
Flanking Amino Acid:
HGELAAAPSQRRSSRDVNSP
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
65.8
0.39
1.1
69.2
36.3
Major PPT
81.9
0.72
0.7
80.4
25
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
46.2
-0.4
1.6
45.89
40.2

Associated Gene:

Gene:
C8A
Ensembl Gene ID:
ENSAPLG00000008086
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008410
27430367 - 27448727
18361