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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27432628_27433580_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27432628 - 27433580
Intron Length:
953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
TTGTGTGACCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACGAAT
U12 Branch Point Sequence:
TCTTGTGTGACC
Flanking Amino Acid:
TDCFPCQEKKHRYRTLVQPA
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.6
39.9
Major BPS
49.7
-0
1.3
59.3
35.9
Major PPT
66.3
0.37
1.1
58.2
46.5
Minor 5ss
37
-1.5
3.5
51.2
39.7
Minor BPS
47
-0.2
2.4
64.69
42.1

Associated Gene:

Gene:
C8A
Ensembl Gene ID:
ENSAPLG00000008086
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008410
27430367 - 27448727
18361