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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27434779_27436289_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
27434779 - 27436289
Intron Length:
1511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
ACTTCCTGAATG
Flanking Amino Acid:
PIPGSEKAAQGYNILTQEEK
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
69.6
0.49
1
59.5
39
Major PPT
73.2
0.52
1
74.3
34.3
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
66.5
0.38
1.5
66.67
41.3

Associated Gene:

Gene:
C8A
Ensembl Gene ID:
ENSAPLG00000008086
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008410
27430367 - 27448727
18361