About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_27436480_27438017_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
27436480 - 27438017
Intron Length:
1538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CCTTTCACTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATGCCTGAAAA
Flanking Amino Acid:
PYNFHVYQFLAHADSGFSFE
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.4
33.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.7
0.58
0.8
69.9
29.5
Minor 5ss
33.4
-1.9
2.7
39.9
32.9
Minor BPS
56.1
0.19
1.7
65.71
39.9

Associated Gene:

Gene:
C8A
Ensembl Gene ID:
ENSAPLG00000008086
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008410
27430367 - 27448727
18361